Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7160

Experiments: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1017040 to 1019381 15527 mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1019624 to 1022322 15528 mRNA_7161: 15529 - Hypothetical Protein, at 1022593 to 1024140 15529

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
1,018,676 + 15527 mRNA_7159 0.70 -1.0
1,018,973 + 15527 mRNA_7159 0.83 1.0
1,018,975 - 15527 mRNA_7159 0.83 1.0
1,018,990 - 15527 mRNA_7159 0.83 -1.9
1,019,116 + 15527 mRNA_7159 0.89 -1.5
1,019,158 + -0.7
1,019,176 + 0.7
1,019,702 - 1.6
1,019,707 + -0.8
1,019,738 - -2.0
1,019,812 + -2.0
1,019,886 + -0.1
1,019,928 + 15528 mRNA_7160 0.11 -0.2
1,019,964 + 15528 mRNA_7160 0.13 0.0
1,020,341 - 15528 mRNA_7160 0.27 -0.6
1,020,592 - 15528 mRNA_7160 0.36 -1.5
1,020,715 + 15528 mRNA_7160 0.40 -2.0
1,020,735 - 15528 mRNA_7160 0.41 -1.1
1,020,982 - 15528 mRNA_7160 0.50 -0.6
1,021,128 - 15528 mRNA_7160 0.56 0.2
1,021,288 - 15528 mRNA_7160 0.62 -1.5
1,021,300 - 15528 mRNA_7160 0.62 -0.3
1,021,455 - 15528 mRNA_7160 0.68 0.0
1,021,969 + 15528 mRNA_7160 0.87 -0.0
1,022,150 - 0.8
1,022,173 - -0.4
1,022,469 + 0.3
1,022,933 - 15529 mRNA_7161 0.22 -1.4
1,023,034 + 15529 mRNA_7161 0.28 -0.4
1,023,056 + 15529 mRNA_7161 0.30 0.3
1,023,214 + 15529 mRNA_7161 0.40 -0.8