Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7116

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915636 to 918075 15483 mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918589 to 919535 15484 mRNA_7117: 15485 - K12868 SYF2 pre-mRNA-splicing factor SYF2, at 920299 to 921602 15485

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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917,602 + 15483 mRNA_7115 0.81 -2.2
917,728 + 15483 mRNA_7115 0.86 -3.8
917,863 - -2.1
917,880 + -3.2
917,999 - -2.5
918,120 - 0.0
918,144 + 0.0
918,147 - -2.3
918,153 - 0.3
918,153 + 0.4
918,153 + 0.8
918,166 - 0.9
918,186 - 0.0
918,192 + -0.8
918,305 - -0.3
918,445 + -0.1
918,736 + 15484 mRNA_7116 0.16 -2.7
918,863 - 15484 mRNA_7116 0.29 -3.5
919,302 + 15484 mRNA_7116 0.75 -3.0
919,304 + 15484 mRNA_7116 0.76 -1.9
919,337 + 15484 mRNA_7116 0.79 -2.7
919,451 + -3.2
919,487 - -3.3
919,496 + -3.8
919,515 - -1.7
919,588 + -0.7
919,598 - -1.8
919,623 + -2.8
919,624 + -2.6
919,636 + -2.0
919,790 - -3.2
919,791 + -1.7
919,794 + -1.2
919,800 + -3.0
919,937 - 0.3
919,942 - -0.6
920,082 - -0.8
920,083 + -0.2
920,107 + 0.2
920,108 + 0.5
920,112 - -2.4
920,237 + 1.3
920,238 + -0.4
920,251 + -1.4
920,255 + 1.0