Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7075

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7074: 15442 - K02218 CSNK1, CKI casein kinase 1, at 821512 to 823166 15442 mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823708 to 824890 15443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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823,087 - -1.5
823,245 - -2.1
823,255 - 0.3
823,395 + 0.8
823,405 + -1.2
823,417 + 0.3
823,531 + -0.3
823,533 - 1.6
823,540 - -0.9
823,545 - -1.2
823,549 + 0.1
823,550 - 0.8
823,551 - 0.1
823,555 - 0.2
823,559 - 0.7
823,560 - -0.2
823,568 - 0.2
823,568 - -1.6
823,580 - -0.1
823,706 + 0.3
823,738 + -0.7
823,792 - -2.1
823,893 + 15443 mRNA_7075 0.16 1.0
824,014 - 15443 mRNA_7075 0.26 -0.9
824,171 - 15443 mRNA_7075 0.39 -0.9
824,445 - 15443 mRNA_7075 0.62 -1.2
824,794 + 0.6
824,887 + -0.6
824,944 + -0.4
825,046 - -0.8
825,048 + -2.5
825,175 - -0.2
825,317 - -1.3
825,330 + 1.9
825,473 + 0.3
825,474 + 0.5
825,482 + -1.1
825,485 + -0.0
825,486 - 0.3
825,486 - -0.1
825,493 + -0.2
825,494 - 0.7
825,495 + 0.3
825,499 + 1.1
825,501 + -0.0
825,623 + 0.7
825,625 - -0.8
825,628 - 0.6
825,629 - 1.2
825,631 + 0.2
825,784 + -0.7