Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7006

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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653,269 - 15373 mRNA_7005 0.21 0.8
653,270 - 15373 mRNA_7005 0.21 0.2
653,274 - 15373 mRNA_7005 0.22 1.8
653,278 + 15373 mRNA_7005 0.22 -3.1
653,286 + 15373 mRNA_7005 0.23 -0.5
653,288 - 15373 mRNA_7005 0.23 1.3
653,294 + 15373 mRNA_7005 0.24 1.1
653,410 - 15373 mRNA_7005 0.37 0.3
653,864 - 15373 mRNA_7005 0.87 0.0
653,977 + 0.8
654,148 - -1.9
654,166 - 1.8
654,255 - -0.5
654,322 + 0.8
654,410 + -0.2
654,598 - 0.2
654,598 + 0.8
655,126 + 15374 mRNA_7006 0.18 -0.7
655,269 - 15374 mRNA_7006 0.21 -0.7
655,607 + 15374 mRNA_7006 0.28 1.1
655,856 - 15374 mRNA_7006 0.33 -1.0
655,922 - 15374 mRNA_7006 0.34 -0.1
655,961 + 15374 mRNA_7006 0.35 -1.0
656,048 - 15374 mRNA_7006 0.37 0.3
656,093 - 15374 mRNA_7006 0.38 -0.0
656,356 - 15374 mRNA_7006 0.43 1.1
656,467 - 15374 mRNA_7006 0.45 -0.1
656,512 + 15374 mRNA_7006 0.46 -1.4
657,068 - 15374 mRNA_7006 0.58 1.1
657,176 - 15374 mRNA_7006 0.60 -1.2
657,421 + 15374 mRNA_7006 0.65 -0.0
657,565 - 15374 mRNA_7006 0.68 2.3
657,573 - 15374 mRNA_7006 0.68 0.4
657,864 + 15374 mRNA_7006 0.74 -0.4
657,885 - 15374 mRNA_7006 0.74 -0.8
658,051 + 15374 mRNA_7006 0.78 -1.7
658,061 - 15374 mRNA_7006 0.78 -0.3
658,194 - 15374 mRNA_7006 0.81 -1.2
658,194 + 15374 mRNA_7006 0.81 0.7
658,195 + 15374 mRNA_7006 0.81 -1.6
658,400 - 15374 mRNA_7006 0.85 1.4
658,463 - 15374 mRNA_7006 0.86 0.9
658,690 - -0.6
658,773 - 0.2
658,925 - -0.0
658,937 - -1.5
658,939 + 1.0
659,067 - 1.3
659,079 + 0.5
659,234 + 0.2
659,235 - -1.8
659,374 - -0.2
659,388 - 0.7
659,493 + 0.5
659,506 - -0.9
659,519 - 0.4
659,534 + 0.4
659,539 - 2.8
659,540 + 0.5
659,548 + 1.6
659,564 - 1.1
659,579 - -1.1
659,579 - -1.1
659,584 + -1.0
659,709 - -0.2
659,736 - -0.1
659,841 + -1.6
659,857 + -0.6
660,001 - 15375 mRNA_7007 0.14 0.5
660,132 + 15375 mRNA_7007 0.30 -3.2