Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7005

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650077 to 652863 15372 mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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652,395 - 15372 mRNA_7004 0.83 1.2
652,562 + 15372 mRNA_7004 0.89 -0.7
652,819 - -0.2
652,835 - -0.1
652,838 - -1.0
652,855 + 1.6
652,992 - 0.3
653,150 + -0.0
653,269 - 15373 mRNA_7005 0.21 0.8
653,270 - 15373 mRNA_7005 0.21 0.2
653,274 - 15373 mRNA_7005 0.22 1.8
653,278 + 15373 mRNA_7005 0.22 -3.1
653,286 + 15373 mRNA_7005 0.23 -0.5
653,288 - 15373 mRNA_7005 0.23 1.3
653,294 + 15373 mRNA_7005 0.24 1.1
653,410 - 15373 mRNA_7005 0.37 0.3
653,864 - 15373 mRNA_7005 0.87 0.0
653,977 + 0.8
654,148 - -1.9
654,166 - 1.8
654,255 - -0.5
654,322 + 0.8
654,410 + -0.2
654,598 - 0.2
654,598 + 0.8