Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6994

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622654 to 624401 15361 mRNA_6994: 15362 - K10134 EI24 etoposide-induced 2.4 mRNA, at 624528 to 626391 15362 mRNA_6995: 15363 - K15323 TSEN34 tRNA-splicing endonuclease subunit Sen34, at 626622 to 627882 15363

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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623,576 - 15361 mRNA_6993 0.53 -1.2
624,020 + 15361 mRNA_6993 0.78 -0.3
624,269 + -0.2
624,303 + 2.0
624,435 - -1.5
624,437 + -0.8
624,454 - -1.3
624,469 + 0.1
624,595 + -1.2
624,723 + 15362 mRNA_6994 0.10 0.1
624,727 + 15362 mRNA_6994 0.11 0.5
624,737 + 15362 mRNA_6994 0.11 1.1
624,743 + 15362 mRNA_6994 0.12 -0.0
624,749 + 15362 mRNA_6994 0.12 0.3
624,880 + 15362 mRNA_6994 0.19 -0.4
624,902 - 15362 mRNA_6994 0.20 1.3
625,205 + 15362 mRNA_6994 0.36 1.1
625,479 + 15362 mRNA_6994 0.51 0.5
625,483 - 15362 mRNA_6994 0.51 0.7
625,507 - 15362 mRNA_6994 0.53 1.1
625,724 - 15362 mRNA_6994 0.64 1.1
626,450 + -0.2
626,527 + -0.0
626,614 + 0.6
626,621 - -0.1