Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6987

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604534 to 605830 15354 mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606395 to 609554 15355 mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609889 to 611754 15356

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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605,959 + 1.0
605,976 + -1.0
606,083 + 1.0
606,083 + -0.8
606,083 - 2.0
606,087 + -0.1
606,088 - 0.3
606,088 - 0.8
606,093 + -0.6
606,098 - -0.1
606,119 - 1.5
606,365 - 0.6
606,489 + -0.6
606,568 - 1.1
606,586 + 1.0
606,682 - -0.1
606,713 + 15355 mRNA_6987 0.10 2.1
606,831 - 15355 mRNA_6987 0.14 0.7
606,844 + 15355 mRNA_6987 0.14 -1.1
606,976 - 15355 mRNA_6987 0.18 -0.7
607,262 - 15355 mRNA_6987 0.27 -0.2
607,401 + 15355 mRNA_6987 0.32 0.4
607,554 + 15355 mRNA_6987 0.37 0.4
608,455 + 15355 mRNA_6987 0.65 0.4
608,455 - 15355 mRNA_6987 0.65 -0.9
609,018 + 15355 mRNA_6987 0.83 0.9
609,037 + 15355 mRNA_6987 0.84 -0.6
609,134 + 15355 mRNA_6987 0.87 -0.5
609,168 - 15355 mRNA_6987 0.88 0.3
609,432 + -0.5
609,450 - -1.1
609,482 + 0.5
609,514 + 0.6
609,752 + 1.0
609,761 - -0.2
609,766 - -0.5
609,774 + -1.9
609,775 - 2.3
609,780 + -1.0
609,780 + -1.6
609,795 - -0.1
609,796 - 1.0
609,800 + 1.1
609,805 - 1.3
609,809 + 0.2
609,813 - 0.2
609,816 + 0.6
609,817 - -0.7
609,994 + 0.5
609,997 + -1.5
610,282 - 15356 mRNA_6988 0.21 -0.9
610,520 + 15356 mRNA_6988 0.34 0.3