Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6985

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599695 to 602665 15352 mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602865 to 604394 15353 mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604534 to 605830 15354

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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601,963 + 15352 mRNA_6984 0.76 -1.7
601,968 - 15352 mRNA_6984 0.77 0.5
602,072 - 15352 mRNA_6984 0.80 0.7
602,394 - -1.3
602,499 - -0.9
602,531 - -1.7
602,673 - -0.4
602,674 - 3.4
602,680 + -0.9
602,694 - 0.1
602,694 - -0.3
602,715 - -0.1
602,715 - -1.4
602,716 + 0.4
602,717 - -0.5
602,733 + 0.7
602,750 - -0.1
602,801 - -0.7
602,828 - 0.5
602,857 + -1.9
603,083 + 15353 mRNA_6985 0.14 0.9
603,264 - 15353 mRNA_6985 0.26 0.1
603,271 - 15353 mRNA_6985 0.27 -0.7
603,374 + 15353 mRNA_6985 0.33 -0.9
603,421 + 15353 mRNA_6985 0.36 0.6
603,424 + 15353 mRNA_6985 0.37 1.4
603,588 - 15353 mRNA_6985 0.47 -1.2
603,591 - 15353 mRNA_6985 0.47 -0.8
603,668 - 15353 mRNA_6985 0.52 0.2
603,677 - 15353 mRNA_6985 0.53 -0.4
603,699 - 15353 mRNA_6985 0.55 0.8
603,974 - 15353 mRNA_6985 0.72 -1.5
603,992 - 15353 mRNA_6985 0.74 1.6
604,129 - 15353 mRNA_6985 0.83 -0.1
604,295 - 0.8
604,300 - 0.8
604,300 - 0.0
604,449 - 0.4
604,454 - -0.1
604,455 + 2.8
604,484 + 0.9
604,589 - -2.1