Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6964

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6963: 15331 - Hypothetical Protein, at 549842 to 550144 15331 mRNA_6964: 15332 - K18754 LIN28 protein lin-28, at 551090 to 553316 15332 mRNA_6965: 15333 - Hypothetical Protein, at 553877 to 555010 15333

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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550,286 + -1.1
550,419 - -0.7
550,443 - -0.2
550,448 - -0.8
550,479 + 0.5
550,489 + 0.3
550,492 + -1.3
550,531 + 1.1
550,536 + -1.5
550,554 - -1.2
550,644 - -1.0
550,649 - 0.2
550,654 - -0.1
550,657 + 1.3
550,721 + 0.5
550,760 - 0.1
550,934 + -1.0
551,411 + 15332 mRNA_6964 0.14 -1.0
551,432 - 15332 mRNA_6964 0.15 -0.9
551,472 - 15332 mRNA_6964 0.17 0.0
551,518 + 15332 mRNA_6964 0.19 -3.0
551,547 - 15332 mRNA_6964 0.21 -1.7
551,552 - 15332 mRNA_6964 0.21 -0.1
551,562 - 15332 mRNA_6964 0.21 -0.1
551,592 - 15332 mRNA_6964 0.23 1.2
551,597 + 15332 mRNA_6964 0.23 0.4
551,597 - 15332 mRNA_6964 0.23 -1.5
551,618 - 15332 mRNA_6964 0.24 0.2
551,624 + 15332 mRNA_6964 0.24 -2.6
551,626 + 15332 mRNA_6964 0.24 -0.6
551,642 + 15332 mRNA_6964 0.25 -0.6
551,656 - 15332 mRNA_6964 0.25 -0.1
551,672 - 15332 mRNA_6964 0.26 -0.5
551,705 + 15332 mRNA_6964 0.28 -0.1
551,780 - 15332 mRNA_6964 0.31 -0.4
551,784 + 15332 mRNA_6964 0.31 -1.1
551,834 - 15332 mRNA_6964 0.33 -0.7
551,911 + 15332 mRNA_6964 0.37 1.1
552,036 - 15332 mRNA_6964 0.42 0.8
552,051 + 15332 mRNA_6964 0.43 -0.6
552,184 + 15332 mRNA_6964 0.49 -0.1
552,330 + 15332 mRNA_6964 0.56 0.1
552,471 + 15332 mRNA_6964 0.62 -0.1
552,607 + 15332 mRNA_6964 0.68 0.3
552,626 - 15332 mRNA_6964 0.69 -1.2
552,660 + 15332 mRNA_6964 0.70 -1.3
553,384 + -0.6
553,441 + 0.7
554,082 + 15333 mRNA_6965 0.18 0.1
554,102 + 15333 mRNA_6965 0.20 -0.3
554,110 - 15333 mRNA_6965 0.21 -1.1