Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6960

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6959: 15327 - K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5, at 537105 to 540222 15327 mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540769 to 543741 15328 mRNA_6961: 15329 - Hypothetical Protein, at 543904 to 547836 15329

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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540,312 + -1.5
540,339 + 0.2
540,437 - -0.1
540,441 - 0.5
540,446 + -0.2
540,449 - 0.8
540,452 + -0.7
540,469 - 0.2
540,476 + 0.5
540,591 + 0.2
540,600 + -0.0
540,612 - -0.5
540,628 + -0.1
540,738 - 0.4
540,758 - 0.1
540,774 + -0.4
540,778 + -1.2
540,891 - 0.8
540,920 - 0.1
541,039 + -1.3
541,315 - 15328 mRNA_6960 0.18 1.6
541,469 - 15328 mRNA_6960 0.24 -2.0
541,660 + 15328 mRNA_6960 0.30 0.2
541,750 + 15328 mRNA_6960 0.33 -0.7
541,777 + 15328 mRNA_6960 0.34 0.5
541,882 - 15328 mRNA_6960 0.37 0.4
541,898 + 15328 mRNA_6960 0.38 0.7
542,045 - 15328 mRNA_6960 0.43 0.4
542,228 + 15328 mRNA_6960 0.49 -1.4
542,342 - 15328 mRNA_6960 0.53 -1.1
542,637 - 15328 mRNA_6960 0.63 0.3
542,820 + 15328 mRNA_6960 0.69 1.0
543,367 + 15328 mRNA_6960 0.87 0.4
543,625 - -0.4
543,638 - -0.1
543,797 - -0.6
544,113 + -0.2
544,371 - 15329 mRNA_6961 0.12 0.5
544,494 - 15329 mRNA_6961 0.15 -2.5
544,494 - 15329 mRNA_6961 0.15 0.3
544,506 + 15329 mRNA_6961 0.15 1.6
544,580 + 15329 mRNA_6961 0.17 0.3