Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6955

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519193 to 522362 15322 mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523015 to 527499 15323 mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528007 to 529680 15324

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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522,410 + 0.2
522,571 + 0.4
522,657 - -0.1
522,672 - 0.2
522,675 + -1.0
522,732 - -0.6
522,735 + 0.6
522,736 - 0.7
522,743 - -0.7
522,749 - -0.8
522,749 - -1.3
522,750 + -1.0
522,779 + 0.8
522,796 + 1.2
522,799 + -1.0
522,799 - 0.8
522,800 - -0.5
522,806 - -0.8
522,809 - 0.9
522,826 - 0.2
522,938 - 0.9
522,946 + 0.2
522,946 - -0.5
522,947 - -0.6
522,950 + 0.8
522,951 - 1.1
522,954 - 0.9
522,966 + -0.6
522,969 + -0.2
522,974 - 1.6
522,982 + 1.8
522,991 + 1.9
522,999 + 0.1
523,008 + 0.0
523,101 + -1.7
523,103 - -1.5
523,118 - 0.4
523,155 - 2.6
523,255 + -0.3
523,293 + -0.6
523,579 - 15323 mRNA_6955 0.13 0.2
523,720 - 15323 mRNA_6955 0.16 -0.6
523,724 - 15323 mRNA_6955 0.16 -1.1
524,039 - 15323 mRNA_6955 0.23 -1.0
524,182 + 15323 mRNA_6955 0.26 -1.7
524,610 + 15323 mRNA_6955 0.36 -0.7
524,929 - 15323 mRNA_6955 0.43 0.0
525,443 - 15323 mRNA_6955 0.54 -1.9
525,483 + 15323 mRNA_6955 0.55 -1.6
525,989 + 15323 mRNA_6955 0.66 -0.1
526,029 - 15323 mRNA_6955 0.67 -0.3
526,307 - 15323 mRNA_6955 0.73 -2.0
526,379 - 15323 mRNA_6955 0.75 -0.2
526,581 - 15323 mRNA_6955 0.80 -0.5
526,775 + 15323 mRNA_6955 0.84 0.2
527,203 - -0.8
527,963 + 0.2
528,061 - 0.1
528,092 + 1.3
528,386 - 15324 mRNA_6956 0.23 0.3