Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6953

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512124 to 517290 15320 mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517419 to 518782 15321 mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519193 to 522362 15322

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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516,762 + 15320 mRNA_6952 0.90 -0.8
516,765 + 15320 mRNA_6952 0.90 0.0
516,769 + 15320 mRNA_6952 0.90 -0.9
516,906 + 0.7
517,043 - -1.8
517,054 - -0.4
517,182 - -1.0
517,216 - 0.0
517,302 - -1.1
517,321 - 0.1
517,502 + 0.4
517,690 - 15321 mRNA_6953 0.20 0.8
517,965 + 15321 mRNA_6953 0.40 -0.1
517,995 + 15321 mRNA_6953 0.42 1.1
518,562 + 15321 mRNA_6953 0.84 -1.2
518,578 - 15321 mRNA_6953 0.85 -0.7
518,584 + 15321 mRNA_6953 0.85 0.7
518,697 - 0.5
518,724 + -1.2
518,742 - -1.0
518,855 - -0.3
518,860 - 1.3
518,864 - 2.3
518,866 + 1.2
518,873 + 2.1
518,949 - 0.1
518,980 - 0.0
518,981 + 0.0
518,989 - 0.4
518,993 - -0.9
518,996 - 2.4
518,998 + 0.1
519,000 + -0.4
519,007 - -1.7
519,015 - -0.8
519,016 - 0.9
519,045 - 0.7
519,054 - 0.0