Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6940

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480977 to 484798 15307 mRNA_6940: 15308 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 484867 to 487020 15308 mRNA_6941: 15309 - K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a, at 487367 to 491016 15309

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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485,148 - 15308 mRNA_6940 0.13 -1.1
485,160 + 15308 mRNA_6940 0.14 0.4
485,379 + 15308 mRNA_6940 0.24 0.0
486,377 + 15308 mRNA_6940 0.70 1.2
486,477 - 15308 mRNA_6940 0.75 -2.4
486,760 - 15308 mRNA_6940 0.88 0.2
486,850 - -0.8
486,947 + 0.5
486,951 + -0.4
487,054 + -0.4
487,066 - -2.7
487,079 - 1.6
487,092 + -0.7
487,104 - 0.2
487,125 - -0.5
487,142 - -0.2
487,155 - -0.0
487,158 + 0.3
487,172 + -1.5
487,224 - -0.6
487,234 - 1.3
487,250 + 0.5
487,253 - 0.3
487,260 - 0.9
487,269 - 0.3
487,270 + -1.0
487,270 - -1.5
487,450 - 1.3