Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6862

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229 mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303833 to 305130 15230 mRNA_6863: 15231 - HMMPfam-Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like-PF05365,SUPERFAMILY--SSF81514, at 305544 to 305791 15231 mRNA_6864: 15232 - K18416 THEX1, ERI1 3'-5' exoribonuclease 1, at 305954 to 308144 15232

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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303,047 + 15229 mRNA_6861 0.66 0.5
303,055 + 15229 mRNA_6861 0.66 0.1
303,140 + 15229 mRNA_6861 0.70 0.7
303,179 - 15229 mRNA_6861 0.72 0.9
303,632 + 0.4
303,758 - 0.7
303,761 - 0.8
303,811 - -0.1
304,083 - 15230 mRNA_6862 0.19 0.6
304,498 + 15230 mRNA_6862 0.51 -0.2
304,611 - 15230 mRNA_6862 0.60 -0.6
304,631 - 15230 mRNA_6862 0.61 -3.0
304,633 - 15230 mRNA_6862 0.62 1.0
304,635 + 15230 mRNA_6862 0.62 -0.2
305,036 - 0.7
305,038 - -0.8
305,225 + 3.1
305,235 - 1.2
305,342 - -0.7
305,350 + -0.4
305,374 - -1.2
305,463 - -0.4