Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6855

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280873 to 281900 15222 mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282233 to 283773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284062 to 291229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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281,238 + 15222 mRNA_6854 0.36 1.5
281,254 - 15222 mRNA_6854 0.37 -1.3
281,300 - 15222 mRNA_6854 0.42 0.4
281,341 + 15222 mRNA_6854 0.46 0.6
281,483 + 15222 mRNA_6854 0.59 -1.2
281,527 - 15222 mRNA_6854 0.64 0.4
281,687 + 15222 mRNA_6854 0.79 0.8
281,779 - 15222 mRNA_6854 0.88 0.3
281,797 + 15222 mRNA_6854 0.90 0.6
281,933 + 1.3
281,941 + 1.5
282,192 - -1.6
282,338 + 0.5
282,372 - -1.0
282,378 + -0.3
282,390 + 15223 mRNA_6855 0.10 -1.9
282,939 - 15223 mRNA_6855 0.46 -0.4
282,977 - 15223 mRNA_6855 0.48 -1.1
283,072 + 15223 mRNA_6855 0.54 -1.6
283,225 - 15223 mRNA_6855 0.64 -0.2
283,306 + 15223 mRNA_6855 0.70 0.5
283,374 + 15223 mRNA_6855 0.74 -1.3
283,528 - 15223 mRNA_6855 0.84 0.2
283,671 - -0.2
283,675 + 0.2
283,681 - 1.3
283,682 - 0.1
283,684 - -0.8
283,687 - 0.4
283,703 + 1.1
283,710 - -1.0
283,718 + 0.3
283,834 + -0.2
283,985 + 0.4
283,989 - 0.8
283,991 - -0.2
283,991 + 0.7
284,019 - -0.4
284,134 - -1.5
284,136 - 0.1
284,286 - 1.7
284,468 - -0.4
284,652 + -1.6