Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6812

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194472 to 196083 15179 mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196368 to 197656 15180 mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198108 to 198984 15181

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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195,957 + -3.3
196,333 - -0.3
196,502 - 15180 mRNA_6812 0.10 1.1
196,503 + 15180 mRNA_6812 0.10 1.5
196,512 - 15180 mRNA_6812 0.11 -2.0
196,650 + 15180 mRNA_6812 0.22 0.7
196,861 - 15180 mRNA_6812 0.38 0.2
196,961 + 15180 mRNA_6812 0.46 -1.2
197,023 + 15180 mRNA_6812 0.51 0.6
197,094 + 15180 mRNA_6812 0.56 -0.0
197,136 - 15180 mRNA_6812 0.60 0.5
197,237 - 15180 mRNA_6812 0.67 -1.0
197,561 - -2.1
197,582 + -2.8
197,649 + 0.3
197,723 + 0.8
197,734 - 0.6
197,837 + 0.3
197,838 - 0.9
197,851 - 0.9
197,853 + -0.3
197,859 + 0.2
198,180 + 0.5
198,194 + -2.1
198,275 + 15181 mRNA_6813 0.19 -0.0
198,331 + 15181 mRNA_6813 0.25 0.8
198,451 + 15181 mRNA_6813 0.39 -0.5
198,580 - 15181 mRNA_6813 0.54 -0.7
198,595 - 15181 mRNA_6813 0.56 1.3