Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6800

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163328 to 165722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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165,778 + 2.4
165,791 - 1.2
165,791 - -2.3
165,812 - 0.5
165,824 - 0.1
165,825 - 2.6
165,825 - 0.3
165,828 + 0.3
165,910 - -0.7
166,306 + 15168 mRNA_6800 0.25 0.3
166,574 - 15168 mRNA_6800 0.40 -1.4
166,583 + 15168 mRNA_6800 0.41 -1.9
166,857 - 15168 mRNA_6800 0.57 -1.6
167,003 - 15168 mRNA_6800 0.66 -0.2
167,045 - 15168 mRNA_6800 0.68 -1.4
167,050 + 15168 mRNA_6800 0.69 -1.4
167,231 + 15168 mRNA_6800 0.79 -1.7
167,304 - 15168 mRNA_6800 0.84 -1.6
167,305 + 15168 mRNA_6800 0.84 -1.0
167,315 + 15168 mRNA_6800 0.84 -1.9
167,339 + 15168 mRNA_6800 0.86 -0.1
167,478 + 0.7
167,606 + -0.1
167,611 + 0.8
167,614 - -0.1
167,626 - -0.1
167,731 - -0.1
167,757 - -0.2
167,763 - 0.9
167,772 + 0.9
167,795 - -0.7
167,890 + -0.4
167,891 + 0.5
167,899 - 0.1
167,900 - 0.9
167,902 + 0.4
167,946 - -0.8
167,953 - -2.2
167,960 - -1.7
167,964 - 0.7
168,029 + 0.3
168,079 - 0.3
168,080 + 1.3
168,085 - 0.0
168,086 + -0.2
168,089 - -0.0
168,089 - 0.4
168,089 - -0.0
168,090 - -0.7
168,090 - -0.8
168,090 + 1.0
168,090 - 0.7
168,091 + -0.7
168,093 + 0.9
168,097 + -0.3
168,107 + 1.7
168,116 + 1.8
168,117 - -0.9
168,117 + 0.0
168,118 - 0.0
168,123 - 1.4
168,138 + 0.5
168,141 - 1.9
168,148 + -0.6
168,149 + -2.7
168,171 + -0.1
168,174 + 2.1
168,177 - -0.6
168,181 - 0.3
168,190 - -2.3
168,190 + 1.1
168,200 - 2.4
168,203 - -0.4
168,205 - -1.9
168,212 + -0.5
168,220 - 0.0
168,224 + 2.1
168,226 - 0.3
168,228 - -1.4
168,229 - 0.9
168,229 + -0.9
168,244 + 0.0
168,244 + 0.9
168,245 - 3.0
168,247 + 0.5
168,247 + -2.0
168,249 + 1.2
168,250 - 0.6
168,279 - 0.0
168,344 - -0.7
168,360 - 0.1
168,383 + 0.5
168,385 - 0.1
168,386 - -0.3
168,505 - 3.2
168,532 - 3.1
168,542 - 2.3