Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6788

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125988 to 127224 15154 mRNA_6787: 15155 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 127368 to 127805 15155 mRNA_6788: 15156 - K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum, at 127975 to 131651 15156 mRNA_6789: 15157 - KOG3335 Predicted coiled-coil protein, at 131775 to 132958 15157

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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127,838 - 0.2
127,841 + 0.2
127,863 + 0.5
127,863 - -1.4
127,864 + 0.7
127,866 - -2.1
127,867 - -0.2
128,011 - -3.0
128,013 + 0.3
128,029 + -2.0
128,058 + -0.8
128,340 + -2.4
128,381 - 15156 mRNA_6788 0.11 0.3
129,079 + 15156 mRNA_6788 0.30 -0.1
129,349 + 15156 mRNA_6788 0.37 -0.4
129,690 + 15156 mRNA_6788 0.47 -1.8
129,696 + 15156 mRNA_6788 0.47 0.5
129,941 - 15156 mRNA_6788 0.53 -0.1
129,971 - 15156 mRNA_6788 0.54 -1.4
130,209 - 15156 mRNA_6788 0.61 -1.5
130,232 - 15156 mRNA_6788 0.61 -2.2
130,680 - 15156 mRNA_6788 0.74 0.2
131,007 - 15156 mRNA_6788 0.82 -0.6
131,199 + 15156 mRNA_6788 0.88 -1.5
131,215 - 15156 mRNA_6788 0.88 -0.9
131,233 + 15156 mRNA_6788 0.89 0.0
131,369 - -2.3
131,574 - -2.5
131,727 + 2.8
131,817 - 0.0
132,175 + 15157 mRNA_6789 0.34 1.0
132,449 + 15157 mRNA_6789 0.57 0.1
132,612 - 15157 mRNA_6789 0.71 0.2