Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6782

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115933 to 117029 15148 mRNA_6781: 15149 - Hypothetical Protein, at 117280 to 117859 15149 mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117941 to 121019 15150 mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121260 to 121958 15151

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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117,211 + -0.2
117,214 + 1.7
117,215 - -0.1
117,221 + -0.5
117,221 + 0.5
117,240 - 1.1
117,254 + 0.3
117,809 - -1.3
118,250 - 15150 mRNA_6782 0.10 -0.1
118,267 + 15150 mRNA_6782 0.11 -2.9
118,538 - 15150 mRNA_6782 0.19 1.5
119,823 + 15150 mRNA_6782 0.61 -0.2
121,152 - 0.9
121,162 - 0.2
121,198 + -0.2
121,203 - 0.6
121,204 + 0.2
121,206 + 0.5
121,216 - 0.8
121,221 + -0.8
121,337 - 15151 mRNA_6783 0.11 -0.3
121,505 - 15151 mRNA_6783 0.35 1.4
121,526 - 15151 mRNA_6783 0.38 1.0
121,532 + 15151 mRNA_6783 0.39 -0.3
121,533 + 15151 mRNA_6783 0.39 -0.2
121,546 - 15151 mRNA_6783 0.41 2.0
121,556 + 15151 mRNA_6783 0.42 0.2
121,819 - 15151 mRNA_6783 0.80 -0.4
121,924 + 1.7
121,962 + 0.4