Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6729

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5048 to 8579 15096 mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8871 to 11490 15097 mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12080 to 14125 15098

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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8,663 - 0.6
9,084 - -1.8
9,541 - 15097 mRNA_6729 0.26 -0.1
9,667 - 15097 mRNA_6729 0.30 -1.4
10,196 + 15097 mRNA_6729 0.51 -0.7
10,197 - 15097 mRNA_6729 0.51 -2.0
10,577 - 15097 mRNA_6729 0.65 -2.3
10,710 - 15097 mRNA_6729 0.70 0.5
10,781 + 15097 mRNA_6729 0.73 0.9
10,787 + 15097 mRNA_6729 0.73 -2.3
10,854 + 15097 mRNA_6729 0.76 -0.2
10,869 - 15097 mRNA_6729 0.76 0.2
10,948 + 15097 mRNA_6729 0.79 0.3
11,038 - 15097 mRNA_6729 0.83 0.9
11,139 - 15097 mRNA_6729 0.87 -0.5
11,157 + 15097 mRNA_6729 0.87 -0.5
11,328 + 0.6
11,378 + -0.1
11,390 - -0.6
11,574 - 0.7
11,608 - 1.0
11,712 - 0.3
11,716 + -0.2
11,855 - -0.6
11,903 - -0.6
11,990 - -0.8
11,994 - -0.7
12,015 - 0.5
12,123 + 0.9
12,165 - -0.5
12,185 + -0.0
12,201 + 1.6
12,314 - 15098 mRNA_6730 0.11 1.3
12,315 + 15098 mRNA_6730 0.11 3.9
12,327 - 15098 mRNA_6730 0.12 -0.1
12,329 - 15098 mRNA_6730 0.12 -0.3
12,332 + 15098 mRNA_6730 0.12 1.2