Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6661

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1373866 to 1375485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1375555 to 1377901 15029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,374,701 - 15028 mRNA_6660 0.52 0.5
1,374,859 - 15028 mRNA_6660 0.61 -0.5
1,375,106 - 15028 mRNA_6660 0.77 1.8
1,375,194 - 15028 mRNA_6660 0.82 0.6
1,375,517 + 1.1
1,376,168 - 15029 mRNA_6661 0.26 0.7
1,376,291 + 15029 mRNA_6661 0.31 0.1
1,376,452 + 15029 mRNA_6661 0.38 -1.0
1,376,499 + 15029 mRNA_6661 0.40 -0.7
1,376,568 + 15029 mRNA_6661 0.43 -0.5
1,376,879 - 15029 mRNA_6661 0.56 -0.0
1,377,050 - 15029 mRNA_6661 0.64 -0.5
1,377,064 + 15029 mRNA_6661 0.64 0.3
1,377,276 + 15029 mRNA_6661 0.73 0.5
1,377,310 - 15029 mRNA_6661 0.75 -0.9
1,377,322 + 15029 mRNA_6661 0.75 0.3
1,377,485 + 15029 mRNA_6661 0.82 1.0
1,377,765 + -1.6
1,377,766 - -3.6
1,378,224 - 1.5
1,378,306 + 1.3
1,378,308 + -0.1
1,378,381 + 1.5
1,378,547 + -0.6
1,378,652 + -0.7
1,378,688 + -0.2
1,378,780 - -0.5
1,378,822 - 0.2
1,378,822 - -0.4