Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6566

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6565: 14933 - SUPERFAMILY--SSF52777, at 1110115 to 1112208 14933 mRNA_6566: 14934 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1112309 to 1113884 14934 mRNA_6567: 14935 - KOG2662 Magnesium transporters CorA family, at 1114168 to 1116354 14935

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,111,508 - 14933 mRNA_6565 0.67 -0.3
1,111,524 - 14933 mRNA_6565 0.67 0.3
1,111,685 + 14933 mRNA_6565 0.75 -1.2
1,111,837 + 14933 mRNA_6565 0.82 1.6
1,112,108 - -0.7
1,112,111 - 0.2
1,112,249 + 0.5
1,112,250 - -0.8
1,112,269 + -0.5
1,112,283 - 0.9
1,112,319 + 1.2
1,112,338 + 0.1
1,112,594 - 14934 mRNA_6566 0.18 -0.3
1,112,595 + 14934 mRNA_6566 0.18 -0.4
1,112,777 + 14934 mRNA_6566 0.30 0.2
1,112,862 + 14934 mRNA_6566 0.35 1.7
1,113,213 + 14934 mRNA_6566 0.57 0.1
1,113,294 - 14934 mRNA_6566 0.62 1.0
1,113,786 - -1.1
1,113,797 - 0.8
1,113,931 - 0.2
1,113,931 - -2.1
1,113,932 + 0.3
1,113,932 - -0.0
1,113,944 + 0.2
1,113,949 + 1.6
1,113,950 + 0.3
1,113,958 + -0.1
1,113,958 - 0.8
1,113,958 - 1.3
1,113,968 - 0.9
1,114,000 - 0.5
1,114,023 + -0.3
1,114,087 + -1.2
1,114,116 - -0.6
1,114,118 - 0.4
1,114,143 + -1.0
1,114,354 - -0.0
1,114,360 + 1.7
1,114,700 - 14935 mRNA_6567 0.24 0.2
1,114,710 + 14935 mRNA_6567 0.25 -0.0