Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6562

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1097755 to 1099041 14929 mRNA_6562: 14930 - K20353 SEC16 COPII coat assembly protein SEC16, at 1099202 to 1104647 14930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,098,279 + 14929 mRNA_6561 0.41 -0.2
1,098,289 - 14929 mRNA_6561 0.41 1.1
1,098,318 + 14929 mRNA_6561 0.44 1.3
1,098,322 + 14929 mRNA_6561 0.44 0.0
1,098,455 - 14929 mRNA_6561 0.54 0.0
1,098,603 - 14929 mRNA_6561 0.66 2.0
1,098,608 + 14929 mRNA_6561 0.66 0.2
1,099,150 + -2.6
1,099,167 - 0.6
1,099,250 + 2.0
1,102,760 + 14930 mRNA_6562 0.65 2.6
1,102,826 + 14930 mRNA_6562 0.67 1.2
1,103,433 - 14930 mRNA_6562 0.78 4.0
1,103,832 + 14930 mRNA_6562 0.85 2.0
1,104,421 + 0.2
1,104,539 + -1.5
1,104,797 - -2.6
1,104,852 + -1.1
1,105,012 - 0.6