Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6560

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6560: 14928 - Hypothetical Protein, at 1095420 to 1097567 14928 mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1097755 to 1099041 14929

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,094,422 + 0.5
1,094,463 + 1.7
1,094,494 + 1.2
1,094,497 - 0.5
1,094,518 - 0.3
1,094,532 - 1.5
1,094,533 + 1.2
1,094,561 + -0.5
1,094,569 + 0.3
1,094,572 - -0.2
1,094,601 + 0.4
1,094,628 - 2.0
1,094,634 + 0.1
1,094,641 + -1.1
1,094,655 - -1.3
1,094,733 - 1.0
1,094,776 - -0.7
1,094,788 - 0.5
1,094,804 + 0.6
1,094,805 + -0.9
1,094,812 + 0.1
1,094,851 + 0.7
1,094,935 + 2.3
1,095,046 + 1.5
1,095,046 + 0.6
1,095,232 + -1.5
1,095,394 - 0.5
1,095,676 - 14928 mRNA_6560 0.12 -0.4
1,096,530 + 14928 mRNA_6560 0.52 -2.1
1,096,544 - 14928 mRNA_6560 0.52 -1.3
1,097,863 - 0.5
1,097,989 - 14929 mRNA_6561 0.18 0.3
1,097,995 + 14929 mRNA_6561 0.19 -0.3
1,097,999 - 14929 mRNA_6561 0.19 1.2
1,098,136 + 14929 mRNA_6561 0.30 -1.1
1,098,279 + 14929 mRNA_6561 0.41 -0.2
1,098,289 - 14929 mRNA_6561 0.41 1.1
1,098,318 + 14929 mRNA_6561 0.44 1.3
1,098,322 + 14929 mRNA_6561 0.44 0.0
1,098,455 - 14929 mRNA_6561 0.54 0.0