Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6487

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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901,588 + 14854 mRNA_6486 0.86 0.5
901,936 - -0.8
901,961 - 0.9
901,962 + -0.7
901,963 - 0.4
901,967 + 0.6
901,986 + 0.1
901,989 + 1.5
901,997 - 0.0
902,020 + 0.4
902,095 - 1.1
902,104 + -0.3
902,129 - 0.3
902,134 + -1.0
902,143 - 1.1
902,157 + 0.6
902,161 + -0.1
902,178 - 1.8
902,252 - -0.0
902,279 - -0.2
902,291 + 1.1
902,298 - -0.4
902,308 + -0.5
902,364 - 0.2
902,364 + -0.8
902,415 + -0.8
902,428 - 0.1
902,572 - 0.6
902,579 - 2.3
902,594 - 0.8
902,643 + 0.9
902,884 + 14855 mRNA_6487 0.13 1.2
903,001 - 14855 mRNA_6487 0.19 -0.0
903,062 + 14855 mRNA_6487 0.21 0.0
903,265 + 14855 mRNA_6487 0.30 1.1
903,743 + 14855 mRNA_6487 0.52 2.1
903,866 + 14855 mRNA_6487 0.57 1.2
903,893 - 14855 mRNA_6487 0.59 2.1
903,981 - 14855 mRNA_6487 0.63 1.4
904,618 + 0.8
904,857 - 0.1
904,883 - 1.0
904,883 - -1.7
904,897 - 1.7
904,899 + 1.0
904,899 - 0.2
904,922 - 0.5
904,923 + 0.5
904,994 + 1.1
904,998 - 0.4
905,047 - -0.3
905,050 + 1.9
905,059 + 2.1
905,073 - 0.7
905,075 - 0.7
905,089 - -1.0
905,091 - 0.2
905,092 + 0.2
905,093 + 0.2
905,110 - -0.6
905,408 - -2.4
905,562 + 14856 mRNA_6488 0.16 -1.0