Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6484

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6483: 14851 - Hypothetical Protein, at 894956 to 895414 14851 mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895404 to 896559 14852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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894,431 - -0.1
894,460 - 0.3
894,465 + -0.5
894,480 + 0.3
894,514 + 0.7
894,561 - -0.5
894,596 + 0.3
894,755 + -1.3
894,768 - 2.4
894,788 + 0.8
894,802 + 0.9
895,140 - 14851 mRNA_6483 0.40 0.7
895,283 - 14851 mRNA_6483 0.71 -0.1
895,321 + 14851 mRNA_6483 0.80 0.4
895,354 - 14851 mRNA_6483 0.87 -1.4
895,446 - -0.2
895,458 + 0.2
895,490 + -1.5
895,504 + 1.0
895,636 - 14852 mRNA_6484 0.20 0.2
895,650 + 14852 mRNA_6484 0.21 0.7
895,651 + 14852 mRNA_6484 0.21 0.6
895,652 + 14852 mRNA_6484 0.21 0.3
896,183 + 14852 mRNA_6484 0.67 -0.4
896,640 + 0.1
897,065 - -1.2
897,339 + -1.0
897,387 + 1.7