Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6467

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6466: 14834 - Hypothetical Protein, at 848394 to 849782 14834 mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850077 to 853413 14835 mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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849,270 - 14834 mRNA_6466 0.63 -0.3
849,282 - 14834 mRNA_6466 0.64 0.3
849,283 + 14834 mRNA_6466 0.64 0.6
849,424 + 14834 mRNA_6466 0.74 0.1
849,550 - 14834 mRNA_6466 0.83 -1.3
849,555 - 14834 mRNA_6466 0.84 -0.6
849,687 + -0.4
849,694 - -0.0
849,715 + -1.1
849,723 + -1.0
849,832 - 2.4
849,860 - -0.1
849,871 - -1.0
849,877 - 0.8
849,988 + -0.8
849,989 - -1.4
849,999 - 0.2
849,999 - -0.2
850,005 - 0.4
850,007 - 0.5
850,018 + 0.3
850,019 + -1.4
850,026 + 0.2
850,029 - 2.6
850,033 + 3.1
850,035 - -0.5
850,145 - -0.4
850,151 - -1.5
850,157 + -0.5
850,180 - 0.6
850,186 + -1.4
850,319 + -0.9
850,330 + 0.5
850,338 + 1.1
850,446 - 14835 mRNA_6467 0.11 0.3
850,599 - 14835 mRNA_6467 0.16 -1.0
850,747 - 14835 mRNA_6467 0.20 0.8
850,870 + 14835 mRNA_6467 0.24 0.0
850,873 - 14835 mRNA_6467 0.24 0.5
851,384 + 14835 mRNA_6467 0.39 -0.6
851,600 - 14835 mRNA_6467 0.46 -0.4
851,817 + 14835 mRNA_6467 0.52 0.1
851,870 + 14835 mRNA_6467 0.54 -0.1
851,876 - 14835 mRNA_6467 0.54 -1.0
852,013 + 14835 mRNA_6467 0.58 -0.8
852,016 - 14835 mRNA_6467 0.58 -0.3
852,056 - 14835 mRNA_6467 0.59 -0.3
852,333 - 14835 mRNA_6467 0.68 -1.2
852,615 - 14835 mRNA_6467 0.76 -0.5
852,648 - 14835 mRNA_6467 0.77 -0.3
853,044 + 14835 mRNA_6467 0.89 -0.8
853,284 + 1.5
853,354 + 0.1
853,377 - -0.1
853,382 + -1.4
853,455 + -1.8
853,586 - 1.0
853,589 - -0.4
853,797 - -1.8
853,911 - 0.1
854,032 - -0.3
854,083 + -0.6
854,320 - 14836 mRNA_6468 0.11 1.2