Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6441

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6440: 14808 - Hypothetical Protein, at 802192 to 802893 14808 mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803025 to 805267 14809 mRNA_6442: 14810 - Hypothetical Protein, at 805308 to 806483 14810

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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802,135 + -3.2
802,282 + 14808 mRNA_6440 0.13 -0.3
802,556 - 14808 mRNA_6440 0.52 -0.4
802,594 - 14808 mRNA_6440 0.57 -0.4
802,655 - 14808 mRNA_6440 0.66 -0.7
802,696 + 14808 mRNA_6440 0.72 -1.0
802,729 - 14808 mRNA_6440 0.76 -0.1
802,773 + 14808 mRNA_6440 0.83 1.0
802,844 - -2.6
802,908 + 0.4
803,674 - 14809 mRNA_6441 0.29 -3.6
803,750 - 14809 mRNA_6441 0.32 -0.7
804,305 + 14809 mRNA_6441 0.57 -3.6
804,328 - 14809 mRNA_6441 0.58 -2.8
804,424 + 14809 mRNA_6441 0.62 -3.0
804,711 + 14809 mRNA_6441 0.75 -1.7
804,715 + 14809 mRNA_6441 0.75 -5.9
805,114 - -0.5
805,131 + -4.1
805,151 - -1.0
805,182 + -2.9
805,306 + 0.8
805,315 + 0.2
805,328 + 0.2
805,353 + 0.7
805,447 - 14810 mRNA_6442 0.12 2.0
805,465 + 14810 mRNA_6442 0.13 1.0
805,469 + 14810 mRNA_6442 0.14 -2.0
805,488 - 14810 mRNA_6442 0.15 -1.3
805,491 + 14810 mRNA_6442 0.16 0.5
805,503 + 14810 mRNA_6442 0.17 -0.1
805,619 + 14810 mRNA_6442 0.26 -0.2
805,745 - 14810 mRNA_6442 0.37 0.4
805,757 - 14810 mRNA_6442 0.38 0.5
805,766 + 14810 mRNA_6442 0.39 0.9
805,771 + 14810 mRNA_6442 0.39 0.3
805,960 + 14810 mRNA_6442 0.55 0.6
805,990 + 14810 mRNA_6442 0.58 1.4
806,061 + 14810 mRNA_6442 0.64 -1.8
806,130 - 14810 mRNA_6442 0.70 -0.6