Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6394

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706440 to 709966 14761 mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710467 to 712891 14762 mRNA_6395: 14763 - K19403 MCPH1 microcephalin, at 713200 to 716170 14763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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709,491 - 14761 mRNA_6393 0.87 0.2
709,496 + 14761 mRNA_6393 0.87 -0.3
709,776 + -0.6
709,800 - 0.8
710,025 - 0.3
710,148 - -0.0
710,178 - 0.5
710,178 + 1.8
710,189 - -1.1
710,201 + 0.0
710,231 - 1.2
710,373 + 0.1
710,504 - 3.2
710,608 - 0.2
710,633 + 0.6
710,635 + -1.1
710,640 - -1.0
710,738 + 14762 mRNA_6394 0.11 -1.7
710,800 - 14762 mRNA_6394 0.14 0.0
710,854 + 14762 mRNA_6394 0.16 -2.3
710,921 - 14762 mRNA_6394 0.19 -1.6
710,922 + 14762 mRNA_6394 0.19 -1.9
710,933 + 14762 mRNA_6394 0.19 0.2
710,934 - 14762 mRNA_6394 0.19 0.4
710,971 - 14762 mRNA_6394 0.21 1.3
711,165 + 14762 mRNA_6394 0.29 -0.5
711,347 - 14762 mRNA_6394 0.36 -0.3
711,363 - 14762 mRNA_6394 0.37 0.2
711,980 + 14762 mRNA_6394 0.62 -0.5
712,066 - 14762 mRNA_6394 0.66 -2.0
712,256 + 14762 mRNA_6394 0.74 -0.2
712,460 - 14762 mRNA_6394 0.82 1.3
712,541 - 14762 mRNA_6394 0.86 0.6
712,636 - 14762 mRNA_6394 0.89 -1.2
712,637 + 14762 mRNA_6394 0.89 0.5
713,267 + -0.2
713,285 - -1.2
713,286 + 0.2
713,428 - 1.4
713,502 + 14763 mRNA_6395 0.10 -1.2
713,704 - 14763 mRNA_6395 0.17 -0.9
713,704 - 14763 mRNA_6395 0.17 -0.7
713,710 + 14763 mRNA_6395 0.17 0.4
713,800 - 14763 mRNA_6395 0.20 1.2