Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6390

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757 mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700093 to 702768 14758 mRNA_6391: 14759 - K11558 SPC25 kinetochore protein Spc25, fungi type, at 703193 to 704324 14759

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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699,198 - 14757 mRNA_6389 0.86 -0.5
699,451 + 0.1
699,506 + -1.2
699,517 + -0.3
699,523 - -1.0
699,604 + 2.5
699,619 - -0.6
699,620 + -0.2
700,055 - 1.7
700,203 + 0.7
700,263 + 0.7
700,481 + 14758 mRNA_6390 0.14 0.8
700,506 - 14758 mRNA_6390 0.15 0.9
700,653 - 14758 mRNA_6390 0.21 2.8
700,899 - 14758 mRNA_6390 0.30 0.3
700,899 - 14758 mRNA_6390 0.30 -0.5
700,899 - 14758 mRNA_6390 0.30 0.1
700,971 + 14758 mRNA_6390 0.33 1.6
701,082 - 14758 mRNA_6390 0.37 0.2
701,130 + 14758 mRNA_6390 0.39 -0.6
701,130 - 14758 mRNA_6390 0.39 0.5
701,136 + 14758 mRNA_6390 0.39 0.7
701,221 - 14758 mRNA_6390 0.42 0.4
701,261 + 14758 mRNA_6390 0.44 -0.3
701,345 + 14758 mRNA_6390 0.47 1.3
701,393 - 14758 mRNA_6390 0.49 0.8
701,529 - 14758 mRNA_6390 0.54 0.2
701,731 - 14758 mRNA_6390 0.61 0.4
702,103 + 14758 mRNA_6390 0.75 0.3
702,572 - 0.5
702,606 + -0.1
703,006 - -1.4
703,009 + -1.9
703,153 + -0.2