Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6388

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6387: 14755 - Hypothetical Protein, at 692168 to 693043 14755 mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693931 to 695622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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692,980 - -1.4
693,174 + 2.0
693,265 - -1.4
693,410 - -1.0
693,412 + -0.7
693,436 + -3.5
693,440 - 0.3
693,443 - -2.3
693,569 + -0.5
693,597 + -0.2
693,735 - 0.5
693,748 + 1.1
693,872 + -2.6
693,874 - -2.0
693,885 + -0.5
693,890 + -1.3
693,891 - 1.2
694,208 + 14756 mRNA_6388 0.16 -0.5
694,321 + 14756 mRNA_6388 0.23 -0.6
694,494 + 14756 mRNA_6388 0.33 0.3
694,764 - 14756 mRNA_6388 0.49 1.5
694,934 + 14756 mRNA_6388 0.59 1.0
694,937 + 14756 mRNA_6388 0.59 0.6
695,746 - 0.5
695,808 - 1.3
695,910 + -0.1
695,918 - 0.2
696,012 - 0.6
696,369 - 1.5