Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6381

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678421 to 679401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679604 to 681699 14749 mRNA_6382: 14750 - Hypothetical Protein, at 682281 to 684206 14750

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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678,638 - 14748 mRNA_6380 0.22 2.2
678,649 - 14748 mRNA_6380 0.23 0.3
678,675 - 14748 mRNA_6380 0.26 -1.3
678,955 + 14748 mRNA_6380 0.54 0.2
679,249 + 14748 mRNA_6380 0.84 -0.5
679,370 - 0.2
679,439 + -1.7
679,527 - -0.8
679,572 - 0.4
679,980 + 14749 mRNA_6381 0.18 -0.0
680,227 - 14749 mRNA_6381 0.30 0.0
680,228 + 14749 mRNA_6381 0.30 -0.5
680,247 + 14749 mRNA_6381 0.31 0.4
680,531 - 14749 mRNA_6381 0.44 -1.1
680,532 + 14749 mRNA_6381 0.44 -1.4
680,585 - 14749 mRNA_6381 0.47 0.7
680,688 - 14749 mRNA_6381 0.52 0.0
680,707 + 14749 mRNA_6381 0.53 0.3
681,255 + 14749 mRNA_6381 0.79 1.5
681,671 + -1.1
681,682 - -1.3
681,702 - 0.7
681,727 + 0.3
681,736 + 2.8
681,760 + 1.5
681,858 - 1.0
681,873 - 0.7
681,874 + -1.1
681,881 + 0.5
681,890 - 0.4
681,892 - 0.8
681,896 - 1.5
681,903 + 2.0
681,905 + 0.8
681,927 - -0.1
681,939 - 0.5
682,015 - 1.1
682,021 + -1.3
682,093 + -0.4
682,093 - 1.3
682,096 + 0.8
682,112 + 3.3
682,365 - 0.9
682,650 - 14750 mRNA_6382 0.19 -0.8