Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6365

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643685 to 645198 14732 mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645356 to 646894 14733 mRNA_6366: 14734 - BLAST putative membrane permease [Rhizoctonia solani 123E], at 647302 to 648659 14734

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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644,412 - 14732 mRNA_6364 0.48 0.6
644,571 - 14732 mRNA_6364 0.59 0.9
644,871 + 14732 mRNA_6364 0.78 -1.3
645,179 + 1.1
645,181 + -0.8
645,298 - 0.1
645,310 - 2.1
645,313 + -0.5
645,313 + 0.4
645,336 - 3.1
645,340 + -0.0
645,477 + -1.2
645,484 - -0.5
645,509 + 0.2
645,636 + 14733 mRNA_6365 0.18 2.1
645,785 + 14733 mRNA_6365 0.28 2.3
645,793 - 14733 mRNA_6365 0.28 0.4
645,930 - 14733 mRNA_6365 0.37 -0.6
646,092 + 14733 mRNA_6365 0.48 0.9
646,492 - 14733 mRNA_6365 0.74 0.2
646,496 - 14733 mRNA_6365 0.74 0.6
646,776 + 1.3
646,943 - -0.3
646,956 - -0.9
647,048 - -0.1
647,080 - 0.4
647,124 - -2.3
647,129 - -1.4
647,133 + -0.4
647,175 - -0.3
647,200 + 0.1
647,203 - 0.3
647,218 + 0.0
647,220 + -0.7
647,230 - 0.1
647,230 + -0.5
647,233 + -0.1
647,246 + 0.2
647,358 - 2.7
647,361 + 0.8
647,366 + 0.7
647,376 + -0.6
647,397 - -0.4
647,415 + 1.4
647,513 + 14734 mRNA_6366 0.16 0.2
647,518 - 14734 mRNA_6366 0.16 -0.8
647,534 + 14734 mRNA_6366 0.17 0.3
647,538 + 14734 mRNA_6366 0.17 -0.4
647,550 + 14734 mRNA_6366 0.18 -0.8
647,550 + 14734 mRNA_6366 0.18 0.5
647,660 - 14734 mRNA_6366 0.26 -0.8
647,859 - 14734 mRNA_6366 0.41 -0.6