Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6345

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592028 to 595751 14712 mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596038 to 599020 14713 mRNA_6346: 14714 - HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335, at 599677 to 600627 14714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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595,297 + 14712 mRNA_6344 0.88 0.5
595,444 - -1.2
595,604 + 0.8
595,605 + 0.4
595,623 + -2.3
596,135 + 0.9
596,920 + 14713 mRNA_6345 0.30 -1.3
597,206 + 14713 mRNA_6345 0.39 1.0
597,312 + 14713 mRNA_6345 0.43 -0.5
597,482 + 14713 mRNA_6345 0.48 -0.8
597,966 - 14713 mRNA_6345 0.65 0.3
597,979 + 14713 mRNA_6345 0.65 -0.5
598,531 - 14713 mRNA_6345 0.84 0.3
598,729 - -2.0
599,415 - 1.3
599,418 - -2.0
599,419 + -0.8
599,420 + -0.3
599,432 + 0.2
599,450 + 0.3
599,451 + 0.6
599,468 - -0.4
599,474 - -1.4
599,482 + 0.3
599,482 - -1.2
599,483 - -0.0
599,484 + -0.4
599,487 + 0.8
599,487 - -0.9
599,489 + -0.3
599,588 + -0.1
599,605 + 1.1
599,609 - 0.3
599,609 - 0.1
599,631 - 0.4
599,663 - 0.2
599,679 + 0.5
599,679 + -0.2
599,735 - -0.4
599,748 + 0.5
599,767 - -1.0
599,837 + 14714 mRNA_6346 0.17 2.3
599,854 + 14714 mRNA_6346 0.19 -0.1
599,859 - 14714 mRNA_6346 0.19 0.1
599,876 + 14714 mRNA_6346 0.21 -0.6
599,877 - 14714 mRNA_6346 0.21 -1.1
599,898 - 14714 mRNA_6346 0.23 -0.5