Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6327

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6326: 14694 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 554507 to 555774 14694 mRNA_6327: 14695 - K13124 MORG1 mitogen-activated protein kinase organizer 1, at 555929 to 557274 14695 mRNA_6328: 14696 - Hypothetical Protein, at 558019 to 558735 14696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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555,351 + 14694 mRNA_6326 0.67 0.5
555,364 - 14694 mRNA_6326 0.68 0.2
555,668 + 0.1
555,679 - -0.3
555,813 + 0.9
555,827 + 0.9
555,844 + -0.7
555,855 - -0.2
555,878 + -0.3
556,083 + 14695 mRNA_6327 0.11 -1.5
556,095 - 14695 mRNA_6327 0.12 -0.7
556,380 + 14695 mRNA_6327 0.34 -0.3
556,687 + 14695 mRNA_6327 0.56 -1.4
557,226 - -0.4
557,251 + -0.7
557,266 - -1.1
557,284 - -0.4
557,379 + -0.0
557,382 - -0.3
557,401 - 0.7
557,402 - 1.3
557,402 + -0.1
557,410 - 0.2
557,412 - -0.3
557,414 - 0.5
557,419 + -0.1
557,419 + 0.6
557,423 + 0.2
557,454 + 0.2
557,543 - 0.0
557,547 - -0.4
557,554 - 0.3
557,555 - -1.1
557,556 - 0.4
557,560 - -0.2
557,568 + -0.4
557,575 + 0.9
557,575 + 0.1
557,594 + -1.5
557,594 + 0.5
557,669 + 1.3
557,671 - -0.7
557,673 + 0.0
557,686 + 1.0
557,688 - -2.1
557,689 - -1.0
557,690 - -0.9
557,690 - -0.2
557,694 - -1.0
557,695 - -0.1
557,700 + 0.9
557,700 + -1.6
557,704 + -0.6
557,707 + -0.4
557,709 - -0.4
557,710 - 1.9
557,713 + 0.3
557,719 - 1.0
557,739 - 0.3
557,749 + 0.5
557,752 - -0.5
557,753 + -0.0
557,755 - 1.5
557,757 - 0.2
557,793 + -0.7
557,901 - 2.5
558,036 - 0.1
558,043 + -1.7
558,045 + 0.5
558,055 + -0.7
558,096 - 14696 mRNA_6328 0.11 1.1
558,196 - 14696 mRNA_6328 0.25 0.4