Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6307

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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493,554 - 0.7
494,285 - 0.9
494,308 - 0.6
494,415 + -0.7
494,446 - 2.0
494,463 + 0.3
494,591 + 0.4
494,604 - -0.3
494,604 - -0.2
494,613 + -0.7
494,615 - -2.4
494,643 + 0.4
494,755 - 1.3
494,779 - 1.5
494,881 - 1.5
494,893 - 0.6
494,894 + -0.7
494,900 - 0.5
494,909 + 0.3
494,912 - 0.4
494,917 + 0.4
494,930 + 0.3
494,943 - 14675 mRNA_6307 0.10 -0.3
495,071 - 14675 mRNA_6307 0.13 0.1
495,208 - 14675 mRNA_6307 0.16 0.8
495,913 + 14675 mRNA_6307 0.33 -0.1
496,079 + 14675 mRNA_6307 0.37 -1.6
496,225 + 14675 mRNA_6307 0.40 -0.2
496,380 + 14675 mRNA_6307 0.44 0.6
496,663 - 14675 mRNA_6307 0.50 0.4
497,408 - 14675 mRNA_6307 0.67 -0.7
497,569 + 14675 mRNA_6307 0.71 -0.6
497,714 + 14675 mRNA_6307 0.75 0.5
498,131 + 14675 mRNA_6307 0.84 -0.0
498,462 - -0.4
498,572 - 1.9
498,736 + 0.0
498,878 + 0.9
498,889 - -1.0
498,894 + 0.4
499,024 - 0.0
499,026 - 2.0
499,027 + 2.8
499,031 - 1.4
499,039 + -0.0
499,048 - 0.8
499,050 + 0.6
499,059 + -0.2
499,065 - -0.2
499,100 + 0.4
499,127 + 0.8
499,127 + -0.8
499,129 + 0.0
499,129 - -1.6
499,136 - 0.8
499,139 - 0.8
499,140 + -0.4
499,147 + -1.0
499,152 - 0.4
499,153 - 1.3
499,170 - -0.5
499,174 - 1.1
499,176 - 0.5
499,178 + 0.7
499,179 - 1.0
499,179 + 0.9
499,182 + 1.1
499,183 + -1.1
499,191 - 0.0
499,205 + 0.9
499,220 + 0.6
499,314 - -2.2
499,321 - 0.2
499,323 - -1.9
499,333 - 2.0
499,335 + 2.0
499,338 + 0.2
499,341 - -0.7
499,341 - 0.9
499,342 - -1.4
499,351 + -0.3
499,372 + -0.2
499,482 - 1.6
499,482 - 0.1
499,485 - -0.2
499,486 + -0.6
499,487 - 1.0
499,569 - 0.0
499,625 - -0.9
499,651 - 1.1
499,775 - -0.4