Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6275

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6274: 14642 - Hypothetical Protein, at 418088 to 419666 14642 mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420027 to 422108 14643 mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422902 to 424921 14644

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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419,284 - 14642 mRNA_6274 0.76 0.0
419,395 - 14642 mRNA_6274 0.83 0.4
419,542 - 2.1
419,699 - 0.5
419,864 - 0.6
419,868 - 0.5
420,010 - -0.2
420,015 - -0.2
420,496 + 14643 mRNA_6275 0.23 -1.2
420,700 + 14643 mRNA_6275 0.32 -0.5
420,712 - 14643 mRNA_6275 0.33 1.0
420,738 + 14643 mRNA_6275 0.34 -2.2
421,517 + 14643 mRNA_6275 0.72 0.9
421,518 - 14643 mRNA_6275 0.72 -0.3
421,674 + 14643 mRNA_6275 0.79 0.2
421,911 + -2.5
421,925 + 1.1
422,006 + -3.0
422,031 + -0.4
422,356 - -0.1
422,361 + -0.4
422,377 - 0.1
422,386 - 1.7
422,400 + 0.3
422,484 - 0.1
422,496 - -0.6
422,509 + 1.1
422,511 + 0.4
422,526 - -0.1
422,668 - 0.3
422,671 - 0.0
422,676 - -0.8
422,681 + 0.5
422,684 + 1.2
422,706 + -0.3
422,816 - 1.1
422,816 + -0.6
422,828 + -0.8
422,842 + 0.1
422,845 + 0.3
422,847 + 0.3
422,970 + -0.0
422,972 + -0.8
422,973 - -4.7
422,977 + -0.1
422,979 + -0.3
422,979 + -0.5
422,996 - -0.2