Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6267

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6266: 14634 - Hypothetical Protein, at 396556 to 399256 14634 mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399476 to 403885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404053 to 405342 14636

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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398,544 + 14634 mRNA_6266 0.74 -0.3
399,156 - -1.0
399,162 - -0.3
399,165 - -0.7
399,179 - -0.0
399,185 + 0.9
399,188 - 0.1
399,300 - 2.9
399,305 - 1.4
399,305 - 0.3
399,306 - 1.8
399,315 + -1.5
399,316 - -1.7
399,316 - -1.0
399,318 - -0.7
399,324 - 1.0
399,325 + 0.3
399,338 + 0.5
399,344 - -0.9
399,349 - -0.4
399,489 + 0.6
399,523 + -0.6
399,654 + -0.8
399,796 - 3.3
399,915 - -0.9
400,496 - 14635 mRNA_6267 0.23 1.8
401,055 + 14635 mRNA_6267 0.36 2.7
401,263 - 14635 mRNA_6267 0.41 0.7
401,636 - 14635 mRNA_6267 0.49 -1.3
402,015 + 14635 mRNA_6267 0.58 -0.2
402,045 + 14635 mRNA_6267 0.58 1.7
402,328 + 14635 mRNA_6267 0.65 1.7
402,496 - 14635 mRNA_6267 0.68 1.4
402,816 + 14635 mRNA_6267 0.76 0.8
402,901 - 14635 mRNA_6267 0.78 1.0
403,180 - 14635 mRNA_6267 0.84 1.8
403,184 + 14635 mRNA_6267 0.84 2.1
403,341 + 14635 mRNA_6267 0.88 -0.7
403,477 + 0.7
403,491 + 2.7
403,496 - 3.0
403,517 - 1.0
403,521 - 1.5
403,641 - 1.6
403,663 + 2.1
403,667 - 1.3
403,667 - 1.6
403,673 + 1.5
403,683 + 0.6
403,684 + 2.3
403,699 + 2.5
403,945 - -0.9
403,952 - 1.2
403,967 + 0.8
403,973 + -1.7
403,973 + 0.2
403,982 - 0.1
403,985 - 0.5
403,986 + 1.1
403,986 + -0.1
403,989 + 0.6
403,994 - 0.6
403,995 + -0.8
403,998 + 0.4
403,999 - 0.9
404,000 + -0.0
404,005 + -0.2
404,007 + 2.8
404,013 + 1.2
404,021 + -0.0
404,126 - -0.6
404,133 - -0.5
404,139 - 0.2
404,143 + -1.6
404,159 + 2.5
404,164 - 0.1
404,164 - -0.3
404,288 - 14636 mRNA_6268 0.18 -1.4
404,299 - 14636 mRNA_6268 0.19 0.0