Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6249

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6248: 14616 - Interpro GET complex subunit GET2 0, at 350255 to 351472 14616 mRNA_6249: 14617 - K01052 LIPA lysosomal acid lipase/cholesteryl ester hydrolase, at 351854 to 354817 14617 mRNA_6250: 14618 - Hypothetical Protein, at 355476 to 357206 14618

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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351,491 - 1.0
351,651 + 1.1
351,659 - -0.4
351,661 - -2.0
351,666 - 0.0
351,677 + -0.2
351,722 + 0.2
351,741 - 0.7
351,771 - -1.2
351,771 - 0.4
351,772 - 0.2
351,772 + 0.2
351,780 - 1.0
351,780 + -0.4
351,792 - 0.1
351,797 - 0.2
351,798 + -0.1
351,801 - 0.0
351,801 - -0.4
351,803 + -0.6
351,955 - -0.6
351,968 - 1.2
351,977 - -0.5
351,979 - -1.2
351,986 - 3.0
351,996 + -2.3
352,122 - -2.0
352,124 + 0.0
352,311 + 14617 mRNA_6249 0.15 1.4
352,395 + 14617 mRNA_6249 0.18 -0.9
352,552 - 14617 mRNA_6249 0.24 -0.2
352,675 - 14617 mRNA_6249 0.28 0.1
352,701 + 14617 mRNA_6249 0.29 -2.5
353,080 - 14617 mRNA_6249 0.41 -0.8
353,088 - 14617 mRNA_6249 0.42 -0.3
353,094 + 14617 mRNA_6249 0.42 -1.0
354,122 - 14617 mRNA_6249 0.77 1.7
354,241 - 14617 mRNA_6249 0.81 0.9
354,241 - 14617 mRNA_6249 0.81 -0.4
355,104 + -0.4
355,138 - 0.9
355,138 + -0.8
355,261 - 0.5
355,267 - -0.2
355,275 + 0.2
355,279 + 0.5
355,290 - 1.2
355,291 - -0.3
355,291 - 1.1
355,412 + 0.0
355,414 - -0.3
355,567 + -1.0