Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6231

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306149 to 307289 14598 mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307619 to 308722 14599 mRNA_6232: 14600 - K17450 ACO2 homoaconitase, at 308954 to 311929 14600

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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306,873 - 14598 mRNA_6230 0.63 1.1
306,875 + 14598 mRNA_6230 0.64 0.3
306,883 + 14598 mRNA_6230 0.64 0.2
306,884 + 14598 mRNA_6230 0.64 0.4
307,019 - 14598 mRNA_6230 0.76 0.5
307,289 - 0.4
307,427 - 1.5
307,443 - -0.3
307,444 + -0.1
307,454 + -0.6
307,576 - -0.6
307,576 - -0.5
307,589 + -0.2
307,594 - 0.2
307,600 + 0.4
307,605 - 0.1
308,574 + 14599 mRNA_6231 0.87 0.2
308,591 - 14599 mRNA_6231 0.88 -0.9
308,605 + 14599 mRNA_6231 0.89 -0.8
308,732 - 0.6
308,733 + 1.2
308,737 - 0.2
308,825 - 0.2
308,828 - -1.7
308,840 + 0.3
308,860 + -0.5
308,870 + 0.0
308,911 + -1.5
309,032 - -0.9
309,040 + -0.5
309,043 + -1.2
309,046 - -0.8
309,075 + -0.5
309,192 - -2.9
309,201 + -0.2
309,213 + -2.1
309,383 - 14600 mRNA_6232 0.14 0.6
309,511 - 14600 mRNA_6232 0.19 -0.8
309,633 + 14600 mRNA_6232 0.23 -1.3