Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6190

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212357 to 214481 14557 mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215040 to 217246 14558 mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218019 to 218832 14559

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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214,103 + 14557 mRNA_6189 0.82 1.5
214,568 + 1.0
214,607 + 2.0
214,702 - 1.0
214,719 + -1.3
214,726 - 0.1
214,733 + 0.2
214,889 - -1.9
214,906 - -1.3
215,201 + 1.0
215,596 + 14558 mRNA_6190 0.25 -1.1
215,619 + 14558 mRNA_6190 0.26 1.1
215,755 - 14558 mRNA_6190 0.32 -0.6
215,816 + 14558 mRNA_6190 0.35 0.5
216,017 + 14558 mRNA_6190 0.44 0.5
216,042 + 14558 mRNA_6190 0.45 -1.1
216,190 - 14558 mRNA_6190 0.52 -0.8
216,331 - 14558 mRNA_6190 0.58 0.4
216,335 - 14558 mRNA_6190 0.59 -1.0
216,752 - 14558 mRNA_6190 0.78 0.2
216,782 + 14558 mRNA_6190 0.79 -1.3
216,937 + 14558 mRNA_6190 0.86 0.4
217,049 - 0.9
217,056 + 0.5
217,057 + -0.6
217,058 - 1.5
217,065 - -0.5
217,071 + -0.2
217,209 + 0.5
217,210 + 0.4
217,220 + 0.6
217,236 - 0.6
217,345 - 0.9
217,351 - 0.8
217,352 + 1.2
217,352 - 0.0
217,363 - 0.1
217,363 - 0.0
217,365 - -0.5
217,366 + 0.8
217,367 - 0.6
217,369 - -3.6
217,370 + -0.6
217,372 - -0.8
217,372 + -0.1
217,372 - 0.6
217,383 + -2.6
217,385 + 1.1
217,390 - -1.0
217,391 + -0.4
217,392 + 2.3
217,392 + -1.4
217,396 - -0.7
217,398 - 0.9
217,408 + 0.3
217,429 - -0.9
217,441 + 0.9
217,460 - 0.1
217,465 + 0.4
217,488 + -0.2
217,549 - 0.3
217,572 + 0.2
217,575 - -0.6
217,594 - -0.6
217,605 + -1.3
217,620 + -0.2
217,623 - -2.6
217,625 - 0.7
217,626 + 0.3
217,628 - 1.1
217,630 - 0.7
217,631 + -0.6
217,633 + 1.7
217,634 + 1.2
217,638 - 1.2
217,639 - 0.4
217,646 - -0.3
217,653 + -1.1
217,655 + 0.9
217,662 - 0.4
217,677 - 1.3
217,694 - -0.6
217,695 + -1.0
217,696 + -0.8
217,706 + 0.6
217,707 + -0.5
217,721 + 0.1
217,739 + 0.7
217,750 + 0.7
217,772 + 0.0
217,777 + -0.7
217,778 + -0.4
217,787 + -0.8
217,801 + -1.1
217,801 + 0.6
217,808 + 0.6
217,818 + 0.3
217,822 - -0.2
217,823 + 0.4
217,823 - -0.0
217,824 + 2.6
217,825 - -0.5
217,825 - 0.2
217,825 + -0.3
217,832 + 0.2
217,833 + -0.2
217,835 + -0.1
217,837 + 2.3
217,841 + -0.6
217,842 + -1.1
217,848 - 0.4
217,851 + -2.2
217,855 - -0.1
217,859 + -0.8
217,874 + -0.8
217,985 + 1.7
217,995 + 0.6
218,006 + 0.3
218,011 - -1.5
218,152 + 14559 mRNA_6191 0.16 1.0
218,164 + 14559 mRNA_6191 0.18 -0.8