Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6175

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176764 to 178095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178357 to 180910 14543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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177,712 + 14542 mRNA_6174 0.71 1.8
178,108 - 1.0
178,194 + -0.6
178,223 + -1.3
178,250 + -0.9
178,526 + -0.6
178,918 + 14543 mRNA_6175 0.22 0.3
179,309 + 14543 mRNA_6175 0.37 1.6
179,350 - 14543 mRNA_6175 0.39 -0.4
179,401 + 14543 mRNA_6175 0.41 -1.4
179,546 + 14543 mRNA_6175 0.47 0.5
179,550 - 14543 mRNA_6175 0.47 -0.7
179,723 - 14543 mRNA_6175 0.53 -0.4
179,817 + 14543 mRNA_6175 0.57 -0.2
179,860 - 14543 mRNA_6175 0.59 -2.4
180,227 + 14543 mRNA_6175 0.73 -1.0
180,234 - 14543 mRNA_6175 0.73 0.4
180,241 - 14543 mRNA_6175 0.74 -0.9
180,433 - 14543 mRNA_6175 0.81 1.7
180,548 + 14543 mRNA_6175 0.86 0.9
180,548 + 14543 mRNA_6175 0.86 -1.4
180,715 + -2.3
180,861 + -1.9
180,987 - 0.7
181,023 - -0.2
181,173 - -1.1
181,182 + -0.2
181,190 - -1.0
181,315 - 1.9
181,321 - 3.4
181,338 - 1.2
181,360 - -0.2
181,361 + 0.6
181,394 - 1.6
181,493 - 0.4
181,517 - -0.0
181,529 - -2.9
181,802 - -1.6