Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6174

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172279 to 176176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176764 to 178095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178357 to 180910 14543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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175,805 + 2.7
175,870 + -0.3
175,941 + -0.3
175,958 - -0.1
176,086 + 2.1
176,107 + -0.7
176,243 + 0.2
176,244 - -2.5
176,249 + -0.8
176,253 - -0.3
176,267 + 1.2
176,448 + -1.2
176,541 - 0.5
176,545 - -1.3
176,553 - -1.3
176,560 + 0.2
176,561 + 2.2
176,563 + -0.3
176,641 - 1.0
176,642 + 0.3
176,645 - -0.2
176,768 - 1.4
176,780 + 1.1
176,932 - 14542 mRNA_6174 0.13 1.6
176,938 + 14542 mRNA_6174 0.13 -1.1
176,938 + 14542 mRNA_6174 0.13 3.5
177,065 - 14542 mRNA_6174 0.23 -1.5
177,249 + 14542 mRNA_6174 0.36 -0.9
177,264 + 14542 mRNA_6174 0.38 -0.0
177,712 + 14542 mRNA_6174 0.71 1.8
178,108 - 1.0
178,194 + -0.6
178,223 + -1.3
178,250 + -0.9
178,526 + -0.6
178,918 + 14543 mRNA_6175 0.22 0.3