Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6166

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151697 to 155852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156004 to 157222 14534 mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157768 to 160667 14535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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155,074 - 14533 mRNA_6165 0.81 -0.5
155,074 - 14533 mRNA_6165 0.81 -0.0
155,128 - 14533 mRNA_6165 0.83 0.3
155,185 - 14533 mRNA_6165 0.84 -0.7
155,224 - 14533 mRNA_6165 0.85 0.8
155,226 + 14533 mRNA_6165 0.85 -0.1
155,337 - 14533 mRNA_6165 0.88 -1.1
155,504 + -2.4
155,627 + -1.4
155,645 - -0.2
155,652 + 0.3
155,661 - -0.3
155,822 + -0.1
155,823 + -1.4
155,832 + 0.3
155,926 - 0.8
155,926 - 0.4
155,931 - -0.2
155,956 + 1.2
155,960 - 1.1
155,970 - 2.4
156,148 + 14534 mRNA_6166 0.12 2.0
156,252 - 14534 mRNA_6166 0.20 -0.2
156,729 - 14534 mRNA_6166 0.59 0.0
156,832 - 14534 mRNA_6166 0.68 0.4
156,935 - 14534 mRNA_6166 0.76 -3.8
156,975 - 14534 mRNA_6166 0.80 0.4
157,097 - 14534 mRNA_6166 0.90 -0.4
157,257 + 0.8
157,547 - -2.5
157,681 - 0.0
157,784 + 1.9