Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6135

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88060 to 89781 14502 mRNA_6135: 14503 - K08614 ADAM28 disintegrin and metalloproteinase domain-containing protein 28, at 90272 to 93233 14503 mRNA_6136: 14504 - Hypothetical Protein, at 93449 to 95989 14504

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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89,730 - -0.3
89,849 - 0.9
89,992 + -1.8
89,995 - -0.3
90,043 - -0.3
90,163 + -0.8
90,176 - -2.8
90,196 - -0.2
90,309 + 1.5
90,310 - 1.1
90,317 - -0.3
90,326 + -0.2
90,341 - 2.5
90,476 - -0.5
90,495 + 0.1
90,524 + -1.9
90,620 + 14503 mRNA_6135 0.12 -0.3
90,622 - 14503 mRNA_6135 0.12 -0.1
90,667 - 14503 mRNA_6135 0.13 0.4
90,765 - 14503 mRNA_6135 0.17 -0.0
90,782 - 14503 mRNA_6135 0.17 0.4
90,901 - 14503 mRNA_6135 0.21 -0.2
91,077 - 14503 mRNA_6135 0.27 -0.0
91,396 - 14503 mRNA_6135 0.38 1.0
91,804 + 14503 mRNA_6135 0.52 -0.5
92,224 + 14503 mRNA_6135 0.66 -0.5
92,506 - 14503 mRNA_6135 0.75 -1.2
92,511 + 14503 mRNA_6135 0.76 -0.1
92,540 - 14503 mRNA_6135 0.77 -0.3
92,694 - 14503 mRNA_6135 0.82 -1.8
92,820 + 14503 mRNA_6135 0.86 1.6
93,147 + 1.6
93,225 + -0.4
93,266 + 0.6
93,286 - 0.1
93,575 + -0.9
93,832 + 14504 mRNA_6136 0.15 -1.3
94,179 + 14504 mRNA_6136 0.29 1.9