Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6132

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79041 to 80063 14499 mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80380 to 84392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85316 to 87118 14501

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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80,394 + -1.8
80,704 - -1.1
81,721 - 14500 mRNA_6132 0.33 0.5
81,745 - 14500 mRNA_6132 0.34 0.1
81,903 - 14500 mRNA_6132 0.38 -0.4
81,942 + 14500 mRNA_6132 0.39 -0.8
82,069 + 14500 mRNA_6132 0.42 1.4
82,481 + 14500 mRNA_6132 0.52 0.3
82,506 - 14500 mRNA_6132 0.53 -1.7
82,783 - 14500 mRNA_6132 0.60 1.2
83,013 - 14500 mRNA_6132 0.66 -2.1
83,022 + 14500 mRNA_6132 0.66 -1.0
83,195 - 14500 mRNA_6132 0.70 0.2
84,043 - -2.0
84,314 + -0.9
84,582 + -1.4
84,720 - -0.3
84,721 - 0.1
84,869 - 0.2
84,871 - -3.1
84,890 - 0.0
84,935 + 0.1
85,033 - -0.6
85,039 - -0.3
85,045 - 0.0
85,056 - -0.4
85,064 - 0.1
85,075 - 0.9
85,095 - 0.2
85,099 - -0.9
85,106 - 0.8
85,113 - 0.2
85,115 + 0.2
85,144 + -0.3
85,282 - -0.9