Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6119

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6118: 14486 - K03164 TOP2 DNA topoisomerase II, at 31417 to 38158 14486 mRNA_6119: 14487 - K15280 SLC35C2 solute carrier family 35, member C2, at 38335 to 41391 14487 mRNA_6120: 14488 - K05954 FNTB protein farnesyltransferase subunit beta, at 41541 to 43349 14488

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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37,569 + -1.0
37,968 + 0.4
37,991 - -0.8
38,175 + 1.0
38,190 + -0.7
38,282 - 0.7
38,287 - 0.3
38,342 + -1.3
38,345 - 0.2
38,448 + -0.3
38,489 + -0.2
38,700 - 14487 mRNA_6119 0.12 0.0
38,738 + 14487 mRNA_6119 0.13 0.2
38,906 + 14487 mRNA_6119 0.19 0.5
39,074 + 14487 mRNA_6119 0.24 2.3
39,195 - 14487 mRNA_6119 0.28 -3.0
39,308 - 14487 mRNA_6119 0.32 -1.5
40,072 - 14487 mRNA_6119 0.57 -0.7
40,621 - 14487 mRNA_6119 0.75 -0.4
40,748 + 14487 mRNA_6119 0.79 -1.8
40,770 - 14487 mRNA_6119 0.80 -0.4
40,776 + 14487 mRNA_6119 0.80 -1.5
41,064 - 14487 mRNA_6119 0.89 0.5
41,171 - -3.0
41,348 - 0.0
41,392 - 1.8
41,508 - -0.7