Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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39 + -0.1
39 + -0.2
40 + -1.4
40 + 0.5
40 + 0.7
41 + -0.7
56 + -1.5
56 + 1.1
56 + 0.1
58 + 0.3
59 + -1.3
59 + -3.7
62 - 2.4
65 - 0.9
77 + 0.5
84 + 0.1
102 + 0.3
137 + -3.5
151 + -0.1
200 + -0.6
208 + -0.3
216 + -0.7
229 + -1.7
348 - -1.6
430 + 1.1
498 - -1.4
502 - 0.7
685 + 14474 mRNA_6106 0.13 0.3
747 + 14474 mRNA_6106 0.15 0.0
755 + 14474 mRNA_6106 0.15 -1.1
946 + 14474 mRNA_6106 0.21 -2.6
975 + 14474 mRNA_6106 0.22 -1.5
1,245 + 14474 mRNA_6106 0.30 -0.9
2,125 + 14474 mRNA_6106 0.55 -0.0
2,839 - 14474 mRNA_6106 0.76 0.7
3,125 - 14474 mRNA_6106 0.84 -0.8
3,248 - 14474 mRNA_6106 0.88 -0.5
3,570 + 0.6
3,665 + -1.6
3,692 + -0.5
3,706 + 0.3
3,726 + -1.4
3,820 + 0.2
3,853 + -0.4
3,859 + 0.5
3,909 - 0.5
3,929 - 1.1