Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6096

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1636949 to 1643604 14463 mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1644523 to 1649566 14464 mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1649855 to 1650926 14465

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,643,840 - 0.0
1,643,898 + 0.0
1,644,079 - -1.8
1,644,079 + 0.2
1,644,310 - 0.3
1,644,314 + 1.0
1,644,334 + 0.4
1,644,468 + -0.2
1,644,485 + -1.3
1,644,619 - 2.4
1,644,642 + 1.5
1,644,677 - 0.9
1,644,762 + 1.3
1,645,213 + 14464 mRNA_6096 0.14 1.4
1,645,362 - 14464 mRNA_6096 0.17 -0.3
1,645,414 - 14464 mRNA_6096 0.18 -1.1
1,645,482 - 14464 mRNA_6096 0.19 -0.2
1,645,738 - 14464 mRNA_6096 0.24 -0.1
1,645,823 + 14464 mRNA_6096 0.26 1.0
1,645,944 - 14464 mRNA_6096 0.28 -0.3
1,646,098 - 14464 mRNA_6096 0.31 0.3
1,646,221 + 14464 mRNA_6096 0.34 1.3
1,646,232 - 14464 mRNA_6096 0.34 -0.3
1,646,406 - 14464 mRNA_6096 0.37 0.8
1,646,415 + 14464 mRNA_6096 0.38 -1.2
1,646,578 + 14464 mRNA_6096 0.41 0.5
1,646,812 + 14464 mRNA_6096 0.45 -1.0
1,646,814 + 14464 mRNA_6096 0.45 0.7
1,646,821 + 14464 mRNA_6096 0.46 -0.3
1,646,906 - 14464 mRNA_6096 0.47 -1.8
1,646,906 - 14464 mRNA_6096 0.47 -0.5
1,646,933 + 14464 mRNA_6096 0.48 -0.2
1,647,403 - 14464 mRNA_6096 0.57 0.4
1,647,620 - 14464 mRNA_6096 0.61 0.9
1,647,689 + 14464 mRNA_6096 0.63 0.8
1,647,855 - 14464 mRNA_6096 0.66 0.6
1,648,213 + 14464 mRNA_6096 0.73 1.2
1,648,260 - 14464 mRNA_6096 0.74 2.9
1,648,386 + 14464 mRNA_6096 0.77 1.9
1,648,396 - 14464 mRNA_6096 0.77 0.2
1,648,439 - 14464 mRNA_6096 0.78 1.2
1,648,469 - 14464 mRNA_6096 0.78 0.4
1,648,510 - 14464 mRNA_6096 0.79 0.1
1,648,647 - 14464 mRNA_6096 0.82 2.8
1,648,744 + 14464 mRNA_6096 0.84 0.5
1,648,747 - 14464 mRNA_6096 0.84 0.8
1,648,863 + 14464 mRNA_6096 0.86 2.0
1,648,926 + 14464 mRNA_6096 0.87 1.2
1,649,007 - 14464 mRNA_6096 0.89 2.1
1,649,062 - 2.5
1,649,071 - 0.6
1,649,100 + -1.0
1,649,251 - 1.7
1,649,267 + 1.6
1,649,405 + 0.7
1,649,410 - 0.4
1,649,460 + 2.4
1,649,578 + 0.9
1,649,656 - 0.2
1,649,656 - 0.0
1,649,663 - -2.5
1,649,726 - -1.0
1,649,738 - 0.2
1,649,835 + 0.5
1,649,848 + 0.1
1,649,999 - 14465 mRNA_6097 0.13 0.3
1,650,071 + 14465 mRNA_6097 0.20 -1.5
1,650,072 + 14465 mRNA_6097 0.20 1.7
1,650,163 + 14465 mRNA_6097 0.29 0.1
1,650,173 - 14465 mRNA_6097 0.30 -1.0
1,650,187 + 14465 mRNA_6097 0.31 1.1
1,650,277 + 14465 mRNA_6097 0.39 1.4
1,650,428 + 14465 mRNA_6097 0.53 -0.6
1,650,478 + 14465 mRNA_6097 0.58 1.0