Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6088

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1617277 to 1619252 14455 mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1619714 to 1621699 14456 mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1622140 to 1623844 14457

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,618,736 - 14455 mRNA_6087 0.74 1.1
1,618,896 + 14455 mRNA_6087 0.82 1.0
1,619,049 - 14455 mRNA_6087 0.90 -0.7
1,619,103 + -1.6
1,619,158 - 0.1
1,619,309 + 0.8
1,619,309 + 2.8
1,619,440 - 0.8
1,619,452 + -0.8
1,619,528 + 0.6
1,619,562 + 1.2
1,619,842 + 0.5
1,619,845 - 0.9
1,619,845 - 1.6
1,619,856 - 0.7
1,619,983 + 14456 mRNA_6088 0.14 -1.5
1,620,055 + 14456 mRNA_6088 0.17 0.7
1,620,270 + 14456 mRNA_6088 0.28 1.2
1,620,716 + 14456 mRNA_6088 0.50 1.3
1,620,826 - 14456 mRNA_6088 0.56 1.1
1,620,841 + 14456 mRNA_6088 0.57 -0.7
1,620,896 + 14456 mRNA_6088 0.60 -0.9
1,620,900 + 14456 mRNA_6088 0.60 0.9
1,621,038 - 14456 mRNA_6088 0.67 1.4
1,621,040 + 14456 mRNA_6088 0.67 -1.4
1,621,059 + 14456 mRNA_6088 0.68 -0.2
1,621,115 - 14456 mRNA_6088 0.71 -1.9
1,621,142 + 14456 mRNA_6088 0.72 1.8
1,621,156 + 14456 mRNA_6088 0.73 -0.2
1,621,310 - 14456 mRNA_6088 0.80 -0.6
1,621,315 - 14456 mRNA_6088 0.81 0.1
1,621,435 - 14456 mRNA_6088 0.87 0.4
1,621,572 - -1.1
1,621,578 + -1.3
1,621,605 - 0.6
1,621,731 - -1.8
1,621,733 + -0.8
1,621,735 + -0.3
1,621,735 + 0.9
1,621,756 - 1.0
1,622,062 - -1.2
1,622,191 - -2.1
1,622,525 - 14457 mRNA_6089 0.23 1.1
1,622,610 - 14457 mRNA_6089 0.28 1.2
1,622,655 - 14457 mRNA_6089 0.30 0.9
1,622,699 - 14457 mRNA_6089 0.33 -0.3